PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00148g00123.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 252aa    MW: 29263.9 Da    PI: 6.7057
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00148g00123.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.65.4e-10541074790
                      FAR1  47 k...........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                               +           +e++ r+r e r+gCka++k k + +g wev ++  eHnH++ 
  Peaxi162Scf00148g00123.1  54 AvakgqsplcsnSEERIRQRLEYRCGCKARIKFKIS-NGMWEVFEFCDEHNHPMI 107
                               244455555555688999****************99.***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-751107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MELSLAAYKT PSNEDNNNNN NINGQEYDKS VHTLKIGMKF SSEDESHEAY NSHAVAKGQS  60
PLCSNSEERI RQRLEYRCGC KARIKFKISN GMWEVFEFCD EHNHPMIEKK LRHFIPSGRK  120
LTDATKNILS SMVDAGIRTK KAVRYLQNEA GGIENAGFIE QDAHNFIQAR KRNMIDSGDC  180
QTLVNRFMDM QSEDPNFFYF FQVDEDGRMC NFFWRDSISK LHYECFGDVM IFDTTYRTNR  240
YDMICAPFVG VK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261901.13e-95PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLK4BG861e-114K4BG86_SOLLC; Uncharacterized protein
STRINGSolyc03g044690.1.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-35FAR1-related sequence 5