PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00148g00610.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 259aa    MW: 29545.8 Da    PI: 8.3799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00148g00610.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08123427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                              +lC+ffar G C  G++C+F H+p
  Peaxi162Scf00148g00610.1  1 VLCKFFAR-GACLKGENCQFLHDP 23
                              59******.*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7222IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-6222IPR000571Zinc finger, CCCH-type
SMARTSM003561002445IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.1792646IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.0056895IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.0E-10126193IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.53E-13127197No hitNo description
PROSITE profilePS5008912.238133191IPR001841Zinc finger, RING-type
SMARTSM001844.2E-7133190IPR001841Zinc finger, RING-type
PfamPF000974.5E-7133190IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180157166IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS501038.418220245IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
VLCKFFARGA CLKGENCQFL HDPIVRYYQK GTCAYGSRCR YERVKLTQSQ PSLPSSSANV  60
LESKRFNTTD QSSCSFSVAG NSPQGDECTH VHGDLCPTCR KPFKPQDREE HMKTCEKGKN  120
QFDIVKHSQE IECGVCLERV LSKPNEAERK FGILSECDHP FCISCIRNWR NGSPTFGMDV  180
NSTLRACPIC RKRSYFVIPS VIWYSTKEEK QEIIDSYKEK LRSIDCKHFD FGNGTCPFRA  240
RCFYKVCFLA STIANVCLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600646.11e-126PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
RefseqXP_016495765.11e-126PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
SwissprotE0X9N41e-105C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S4C3R11e-125A0A1S4C3R1_TOBAC; E3 ubiquitin-protein ligase makorin-like isoform X2
STRINGXP_009600645.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-106C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]