PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00150g00126.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 472aa    MW: 55148.4 Da    PI: 7.263
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00150g00126.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.71.9e-1868159290
                      FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                               +Y ++Ak++GFsvr+++   s +++  i++r++vC + g+++++  + ++++r r+++r++C+ak+   ke      +w+v  ++
  Peaxi162Scf00150g00126.1  68 CYVNFAKRIGFSVRRDRYFGStEHHIGIYRRDYVCHRAGSPRPKIVE-KERQRYRKSSRCNCNAKMAAAKEIidgITNWKVVYFD 151
                               7***************998885566679****************999.99999***************9998756679******* PP

                      FAR1  83 leHnHela 90 
                               + HnHel 
  Peaxi162Scf00150g00126.1 152 NVHNHELL 159
                               ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-1668159IPR004330FAR1 DNA binding domain
PfamPF105515.7E-29250343IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MKVSVDSRLN VSRTHRPCGD NECYIHGDIV GGTSERDNEE LRQEYFDIGN TDLHKGKFFN  60
SEDEAYNCYV NFAKRIGFSV RRDRYFGSTE HHIGIYRRDY VCHRAGSPRP KIVEKERQRY  120
RKSSRCNCNA KMAAAKEIID GITNWKVVYF DNVHNHELLN DKEVKYLPAY RNIEFIDQKR  180
ISLLAKAGCS IKSSTNIEYD ALELLKICKS LKDEDVDFQF DFTVDACRRL ENIVWAFWDS  240
IRVYELFGDV VVFDTTYRLN RYEMPLGVWV GVNNHGNIIF FGCVLLRNEK TSSFYWALKS  300
FLWLMSGKHP QTILTDQDLG LTEAIAHELP LTKHAFCIWH ITSKFSTWFY FVLVGTTVSI  360
RNQAGEEAMM RQKYYNPQIK TLMPMEKHAS KVLTPFAFKD LTHESMKTRG RLEYAKRELE  420
KGLQTVQYLP ANKPINEDHE HVAISQSAED NSPDEDYHIE NPRQKEGREE KD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499085.11e-168PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY665e-94FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1S4CD641e-167A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_009596355.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-96FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]