PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00152g00632.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26885.4 Da    PI: 6.2956
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00152g00632.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-212371149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              k+i nk  r vtfskR +g++KKA+ELS+LC+ae+a+i+ s  gk++ +
  Peaxi162Scf00152g00632.1 23 KKITNKESRAVTFSKRHKGLFKKASELSILCGAEIAIILQSLAGKVFAF 71
                              689******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-291574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.7961575IPR002100Transcription factor, MADS-box
CDDcd002651.34E-331691No hitNo description
SuperFamilySSF554551.57E-251690IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-191737IPR002100Transcription factor, MADS-box
PfamPF003198.1E-222471IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-193752IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-195273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNKENNPTNM VKKTQGRRKI EIKKITNKES RAVTFSKRHK GLFKKASELS ILCGAEIAII  60
LQSLAGKVFA FGHPSPNVVI ERYLTDIGRS EAGTSVTGAE TTMQTNLTVQ QYNQYYSQLC  120
REVEAEKKKK DIMMEEMKNM GNDNYYTNNG GYWWDKPTDD MGLEELEEFM VALEELKKNV  180
SVRADELAMI NNSSMPSSSN STLTTTNRFG VDHDKELLNQ TLDFCSSTSI VPYDAWF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.15e-74agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7ERW31e-72A0A3Q7ERW3_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.12e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.13e-25AGAMOUS-like 23