PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00155g00103.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 115aa    MW: 13413.3 Da    PI: 5.0597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00155g00103.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.94.7e-121155347
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                              i+ k +    fskR+  ++KK eELS+L+ +++ v++fs++ k  
  Peaxi162Scf00155g00103.1 11 IKQKKQIMSPFSKRKVSLFKKEEELSTLTKVNIGVLLFSPSEKEN 55
                              5666666677******************************98755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-15160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-16172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.806161IPR002100Transcription factor, MADS-box
CDDcd001205.21E-15260No hitNo description
PRINTSPR004042.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-121153IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGRQKIEMKL IKQKKQIMSP FSKRKVSLFK KEEELSTLTK VNIGVLLFSP SEKENSYVST  60
STEELKDKFV QWKQDISEDD ESDSKFDVFK VFDDLPDELE ISNELEKGRK TSSQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779179.11e-26PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_015159413.12e-26PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_016513680.11e-26PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_019240978.12e-26PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G3AI839e-27A0A2G3AI83_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000338613e-26(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-14AGAMOUS-like 61