PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00156g00918.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 224aa MW: 24421.4 Da PI: 4.6723

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00156g00918.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	9e-44	67	166	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lqq Peaxi162Scf00156g00918.1 67 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQQ 151 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+aela++++e Peaxi162Scf00156g00918.1 152 QISELQAELAKAQAE 166 *********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.738	66	167	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-43	67	164	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MECTSDKTNT TISSLSASSL INSSSNYSSS PNSYPINISS STNSSGSIRS TISTPPPSPT 60 VPVILTPCAA CKILRRRCVE KCVLAPYFPP TEPLKFTIAH RVFGASNIIK MLQELPEEQR 120 ADAVNSMVYE ANARIRDPVY GCAGAICQLQ QQISELQAEL AKAQAEILNV QCQNSNLLAL 180 VCMEVSDQEN SSSLFSSDHH DYGNNNSMFL EDNSVYGAWE PLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-46	58	172	2	116	LOB family transfactor Ramosa2.1
5ly0_B	7e-46	58	172	2	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	2e-46	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	2e-46	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253003.1	1e-109	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	8e-74	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1J6I4S1	1e-108	A0A1J6I4S1_NICAT; Lob domain-containing protein 1
STRING	XP_009611728.1	1e-102	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-66	LOB domain-containing protein 1