PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00163g00419.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRF
Protein Properties Length: 361aa    MW: 39804 Da    PI: 8.9299
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00163g00419.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC62.75.7e-20134174144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+epgrCrRtDGKkWR   +v++g+k+CErH+hrgrsrsrk++e
  Peaxi162Scf00163g00419.1 134 DPEPGRCRRTDGKKWR---DVVAGQKYCERHVHRGRSRSRKPVE 174
                               79*************7...**********************987 PP
2QLQ508.8e-186499136
                       QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                              s+F+ aQ+q+L+ Q+l+y++++a++PvPpeLl +++
  Peaxi162Scf00163g00419.1 64 SYFSLAQWQELELQALIYRHFIAGAPVPPELLHIVK 99
                              79******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.0E-964100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.30365100IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.7E-126598IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166713.709134175IPR014977WRC domain
PfamPF088795.1E-16135174IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDFNLKQWRN QQHESEEEQP TNSARLLFDF NSSTSDSALP LFVTEPTNKL SDSTTATKFP  60
RMGSYFSLAQ WQELELQALI YRHFIAGAPV PPELLHIVKK SLINSPSTYY FSHPYQQYPQ  120
QYQQAWYWGK AAMDPEPGRC RRTDGKKWRD VVAGQKYCER HVHRGRSRSR KPVEIPTPAA  180
TISKHSTAVS QTLTKMAGHA ASTPDQFSLS GPSPSMDILH LSQRPSESNK GPLEAQQDVS  240
GDGKSSGQVL RHFFDDWPRQ LQNGDNAGNG STSVASATSL SISMPGNPSS DFSLKLSTGN  300
DYNSNAQVSN VERSIWGTNR VSSMGGPLAE ALRSSATNSS PTSVLHQLSR GSTSEASYIS  360
T
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139773e-40BT013977.1 Lycopersicon esculentum clone 133022R, mRNA sequence.
GenBankHG9754493e-40HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755223e-40HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246611.10.0PREDICTED: growth-regulating factor 3-like
SwissprotQ8L8A72e-87GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A1J6J7F40.0A0A1J6J7F4_NICAT; Growth-regulating factor 3
STRINGXP_009771979.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.12e-76growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]