PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00165g01727.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family E2F/DP
Protein Properties Length: 104aa    MW: 12041.8 Da    PI: 5.7901
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00165g01727.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP50.34e-164563371
                   E2F_TDP 33 eLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                              e+++                d+kn rRR+YD+lNVL+al+++e+ +++eirwkg
  Peaxi162Scf00165g01727.1  4 EIIALfkatesnfsvphnesDEKNARRRVYDALNVLMALDIVER-DRKEIRWKG 56
                              5544445555666667777799**********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-21160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-5156IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-13256IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-111257IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
VADEIIALFK ATESNFSVPH NESDEKNARR RVYDALNVLM ALDIVERDRK EIRWKGLPNS  60
DSRDMEETKM LHAELMAKIG KKAAYLKDLE EQVRSISMFF LILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-141633495PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542614.11e-49PREDICTED: transcription factor-like protein DPA isoform X1
RefseqXP_016542615.11e-49PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY32e-29DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A1U8EFG73e-48A0A1U8EFG7_CAPAN; Transcription factor-like protein DPA
TrEMBLA0A1U8EH073e-48A0A1U8EH07_CAPAN; transcription factor-like protein DPB isoform X2
TrEMBLA0A2G2VXG73e-48A0A2G2VXG7_CAPBA; Transcription factor-like protein DPA
TrEMBLA0A2G2YQY03e-48A0A2G2YQY0_CAPAN; transcription factor-like protein DPA isoform X1
STRINGSolyc09g010670.2.19e-47(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.37e-32Transcription factor DP