PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00171g01120.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 339aa    MW: 37888.2 Da    PI: 6.4238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00171g01120.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-061792181255
                               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Peaxi162Scf00171g01120.1 179 RREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 218
                               9*****************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.439167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-4178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-12178234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.08E-7179222No hitNo description
Gene3DG3DSA:4.10.280.102.5E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAAYSYQLQH TNPFLVDTVF LPSSPIKMSG YLEEPNNQNY FSQFYQLPES CQHLPTNMIV  60
HESSYCLDQS TNVTLSQNEP SETNKSSSSN ILDIESSSVT DKIETGNKPM NKKRKAREGS  120
NSSMSSAHSK NVREGDHGKK KKNNSQVSKD AKEKKGSDDN KKEENKSHEE APTGYIHVRR  180
EKISERMKIL QSLVPGCDKV TGKALMLDEI INYVQSLQNQ VEFLSMKLAS SNPMYYDFGM  240
DLDALMVRPN QNLGGLETPL PNIQQTSITD TTPQAAAVIP NINNGYPFLD NSASLLFQQA  300
HFPNSISQGN GQLLWGADDQ RQKITIDQSG FSNNFCSFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539240.0HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312696.11e-169transcription factor bHLH137-like
RefseqXP_009786910.11e-169PREDICTED: transcription factor bHLH137
TrEMBLA0A1U7XK931e-168A0A1U7XK93_NICSY; transcription factor bHLH137
TrEMBLM5BCF41e-168M5BCF4_TOBAC; BHLH transcription factor
STRINGXP_009786910.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-44bHLH family protein