PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00174g00149.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 244aa    MW: 27583.1 Da    PI: 6.8546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00174g00149.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018160182123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C k F+++  L  H r+H
  Peaxi162Scf00174g00149.1 160 YQCGTCYKLFKTSQALGGHKRSH 182
                               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.7E-9528No hitNo description
PfamPF139123.4E-6628IPR007087Zinc finger, C2H2
SMARTSM003550.074628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576677.7E-9155182No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4157182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.972160182IPR007087Zinc finger, C2H2
PfamPF139128.5E-8160182IPR007087Zinc finger, C2H2
SMARTSM003551.4160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSMEKHKCKL CSRKFLNGKA LGGHMRSHLM TLPPKTPPLN QDSGESSTLS LCSSEENQEV  60
LELQNKDNVS YGLREKPKKS YRMIDPEFLE DRESETESTK TGKRSKRSRK MVASDEKMKP  120
LSLFSNCSSD EDIAMCLMML SRDVWKSSSE TLEVSKVRKY QCGTCYKLFK TSQALGGHKR  180
SHLVIMSSST TTGSCSMEYS NSAKLHNGFI DLNMPAPMED EDFSQQPDFS AVSEADFQQD  240
QEHE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591197.11e-89PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1J6IGJ42e-72A0A1J6IGJ4_NICAT; Zinc finger protein zat4
STRINGXP_009591197.16e-89(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.19e-17C2H2-like zinc finger protein