PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00177g00109.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 372aa    MW: 41682.1 Da    PI: 8.5532
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00177g00109.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51.1e-1054110155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  Peaxi162Scf00177g00109.1  54 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEGAAAHAYDLAALKYWG 110
                               57*******************99998898888888*****5699***********98 PP
2AP251.13.2e-16153204155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Peaxi162Scf00177g00109.1 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 204
                               89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-1454120IPR016177DNA-binding domain
PfamPF008476.9E-754110IPR001471AP2/ERF domain
PROSITE profilePS5103217.8255118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-1255119IPR001471AP2/ERF domain
SMARTSM003804.9E-1955124IPR001471AP2/ERF domain
PRINTSPR003674.3E-65667IPR001471AP2/ERF domain
PfamPF008475.9E-12153204IPR001471AP2/ERF domain
CDDcd000184.36E-24153214No hitNo description
SuperFamilySSF541711.11E-17153214IPR016177DNA-binding domain
PROSITE profilePS5103218.334154212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17154213IPR001471AP2/ERF domain
SMARTSM003801.2E-24154218IPR001471AP2/ERF domain
PRINTSPR003674.3E-6194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAKLSQQNQR NSSNNNNSTT NNANIITTTT GSSALKVKRT RKTVPRDSPP QRSSIYRGVT  60
RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YDDEGAAAHA YDLAALKYWG SETILNFPLS  120
TYEKEIIEMD GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL KPNKNNTTNE PNVETNMLPT  240
PNHSIGSSST STTTTTTMTS ASTGTPIYPH VQLTNMPDAS SSQTRPPSAT SALGLLLQST  300
KFKEMMEMTL AAECSPAPVE SDPLPQSSFP EDIKTYFDTQ DFGNFGHDQG GDLIFNEINS  360
FMQPLLQFEF DV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793520.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-106AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7Y4120.0A0A1U7Y412_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009793520.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-97ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]