PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00180g01013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 253aa    MW: 28994.5 Da    PI: 6.2432
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00180g01013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.52.6e-2989176291
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+
  Peaxi162Scf00180g01013.1  89 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVNSGKWVVTKFVKEHT 171
                               ******************************************9988..9************************************ PP

                      FAR1  87 Helap 91 
                               H+l+p
  Peaxi162Scf00180g01013.1 172 HPLCP 176
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2689176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MELVDFVVDD IDGEEEEGTL VEVRAVDESA VGGSSSEEAL HQVLDVKVDE EISEREVVSL  60
EEAQSLGNST SDEPYVGQEF ESEAAAHAFY NAYATRVGFI IRVSKLSRSR RDGSAIGRAL  120
VCNKEGFRMP DKREKIVRQR AETRVGCRAM ILVRKVNSGK WVVTKFVKEH THPLCPGKGR  180
RDLIYDQYPN EHDKIRELSQ QLAAEKKRSA TYKRHLEMIF EHIEEHNQSL SKKIQDIVHN  240
VREMESRDQH HHR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164249.11e-167PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0V0HLI01e-165A0A0V0HLI0_SOLCH; Uncharacterized protein
STRINGPGSC0003DMT4000694951e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115682325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-98FAR1 family protein