PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00181g00124.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 361aa    MW: 40413.1 Da    PI: 8.0794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00181g00124.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.56.3e-54151421128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka
  Peaxi162Scf00181g00124.1  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-DIIAEIDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 98 
                               79****************************.99***************988899******************************* PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk+v+++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+
  Peaxi162Scf00181g00124.1  99 TGTDKPVFTTgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRI 142
                               ********9977788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-657176IPR003441NAC domain
PROSITE profilePS5100562.06915176IPR003441NAC domain
PfamPF023652.8E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESTDSSSGT QQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVDIIAEI DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVFTTGG TQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RIAENKTNNK PPGCDVANKK GSLRLDDWVL CRIYKKNNPQ  180
RQVDHESDDM NDMMIGSIPP CIQNSIPSFG TQSHQGLKVS NYYGALLDHE HNLYEGIIRN  240
TDDMLNNGSI SQLSSKSQLP INVTSVLPAK RPLPAGLYWS EDNGNSSSTR RFLAENGDDG  300
LSMNNTTRTD HEQNSSIASL LNQFPQTPSF NQQPQVLGSL TDGVFRQPYN HQVNGMNWPY  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-751217814167NO APICAL MERISTEM PROTEIN
1ut4_B3e-751217814167NO APICAL MERISTEM PROTEIN
1ut7_A3e-751217814167NO APICAL MERISTEM PROTEIN
1ut7_B3e-751217814167NO APICAL MERISTEM PROTEIN
3swm_A3e-751217817170NAC domain-containing protein 19
3swm_B3e-751217817170NAC domain-containing protein 19
3swm_C3e-751217817170NAC domain-containing protein 19
3swm_D3e-751217817170NAC domain-containing protein 19
3swp_A3e-751217817170NAC domain-containing protein 19
3swp_B3e-751217817170NAC domain-containing protein 19
3swp_C3e-751217817170NAC domain-containing protein 19
3swp_D3e-751217817170NAC domain-containing protein 19
4dul_A3e-751217814167NAC domain-containing protein 19
4dul_B3e-751217814167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769986.11e-172PREDICTED: NAC transcription factor 25
RefseqXP_016484530.11e-172PREDICTED: NAC transcription factor 56-like
SwissprotQ9LD441e-117NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2U9IY251e-175A0A2U9IY25_CATRO; NAC domain containing protein 056
STRINGXP_009769986.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-119NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]