PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00182g00711.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 304aa    MW: 35414.1 Da    PI: 7.5331
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00182g00711.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.6e-52111381128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhP+deel+++yL +k++ +++++ ++i+ev++yk++Pw+Lp+k+  +e+ewyfF++rd+ky++g+r+nr++ sgyWka
  Peaxi162Scf00182g00711.1  11 LPPGFRFHPSDEELIMHYLINKAALRPVPA-NIIAEVELYKFNPWELPEKAVFGEEEWYFFTPRDRKYPNGRRPNRMAVSGYWKA 94 
                               79***************************9.89***************8777899****************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk+++s+ +g+++glkk Lvfykg+ pkg+kt+W+mheyrl
  Peaxi162Scf00182g00711.1  95 TGTDKPIFSSgGGKVIGLKKALVFYKGKPPKGSKTEWIMHEYRL 138
                               *********978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-627164IPR003441NAC domain
PROSITE profilePS5100559.81911164IPR003441NAC domain
PfamPF023651.2E-2512138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEKTSSSNIQ LPPGFRFHPS DEELIMHYLI NKAALRPVPA NIIAEVELYK FNPWELPEKA  60
VFGEEEWYFF TPRDRKYPNG RRPNRMAVSG YWKATGTDKP IFSSGGGKVI GLKKALVFYK  120
GKPPKGSKTE WIMHEYRLPQ NLWNSKKKWS MRLDDWVLCR VWRKTSMYES RYDHTNEPQQ  180
CYSTGKPYFT DTTPKLKLTD EDHLFKDCPM LPFLCEDTKI TAASSILQLK PEVDNNSPWY  240
DLFNSLNKKQ FEGNTEEGLT QKEEQVPFAL GEDNTIGHIS SSNIEQLQLQ NFNANYWDPT  300
NPYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-6921696173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070370.11e-97NAC transcription factor 56-like
SwissprotD2SMN42e-77NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLA0A068UGJ22e-94A0A068UGJ2_COFCA; Uncharacterized protein
STRINGVIT_08s0040g02110.t011e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133901117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-77NAC domain containing protein 25
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]