PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00186g00011.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

BBR-BPC

Protein Properties

Length: 199aa MW: 22336.1 Da PI: 8.3476

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00186g00011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	154.2	2.2e-47	3	189	94	254
GAGA_bind 94 alpvgvqvlsgtksidslqq.lse.pqledsavelreeekle.alpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkseks 174 +p+g+q+ +g k++++ qq +++ +le+++++l++ +++e + p++ aa+e ++ +++k++++ak+ ++k++ k+ kk + + Peaxi162Scf00186g00011.1 3 PCPPGCQIAHGEKHMHHPQQhVHHqLHLEEPTFNLSDLHMNEsSSPLSPAAPEPTKPSRNKRTKEAKSVISSKQTsKPSKKMKRE 87 58****************54445789999999999888762578888888888888888888777777766665666655555 PP GAGA_bind 175 kkkvkkesader......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtt 237 ++ +k d++ sk ++k++dl+ n+v +Dest+PvPv sCtG++r CYkWGnG WqS+CCtt Peaxi162Scf00186g00011.1 88 AEDLNKTMLDKSqewngtqemgcgsdvfnrqlsvSKPDWKDQDLGFNQVPFDESTMPVPVSSCTGVSRACYKWGNGCWQSSCCTT 172 55555555553357999**************************************************************** PP GAGA_bind 238 tiSvyPLPvstkrrgaR 254 ++S+ PLP+ +++r+aR Peaxi162Scf00186g00011.1 173 NLSMSPLPTFPNKRHAR 189 **************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.9E-13	1	195	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.3E-40	16	189	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MSPCPPGCQI AHGEKHMHHP QQHVHHQLHL EEPTFNLSDL HMNESSSPLS PAAPEPTKPS 60 RNKRTKEAKS VISSKQTSKP SKKMKREAED LNKTMLDKSQ EWNGTQEMGC GSDVFNRQLS 120 VSKPDWKDQD LGFNQVPFDE STMPVPVSSC TGVSRACYKW GNGCWQSSCC TTNLSMSPLP 180 TFPNKRHARN EWKCVHQAA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803495.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803496.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803498.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803499.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803500.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803501.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803502.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803503.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803504.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803505.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803506.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_009803507.1	1e-102	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	2e-41	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A1U7YND6	1e-101	A0A1U7YND6_NICSY; protein BASIC PENTACYSTEINE6-like
STRING	XP_009803495.1	1e-101	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.3	1e-40	basic pentacysteine 6