PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00188g01023.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 285aa    MW: 31678.2 Da    PI: 4.7198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00188g01023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-0517501855
                              HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              s+f+ Lr l+P+     ++K + a+ L ++++Y+ sLq
  Peaxi162Scf00188g01023.1 17 SRFQILRNLIPHT----DQKRDTASFLLEVIQYVESLQ 50
                              68**********8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-51754No hitNo description
Gene3DG3DSA:4.10.280.107.1E-101868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-81871IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MPEHNFYTLD KACLSISRFQ ILRNLIPHTD QKRDTASFLL EVIQYVESLQ EKVQKYEGSY  60
EPWSSEPTKL MPWRNSHWRT QSVPAHPQAL KNDAGTGPAY AGRFDENLAT ATSSMQAIQQ  120
NPVESLPGTD VYFKSIDQQK ELASRGIAIQ MPLQASMPVS LQNDSAFSDS LHRPGSDECP  180
NTTNALNHEE EFMIEGGTIS ISSSYSQGLL DSLTRALQTA GLDLSQATIS LQINLGKQVN  240
SGMTSGASVA KDNETPPRVG NQFMVQFRDE DHDEDLDQAE KRLKI
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247319.11e-134PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-74BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2G3B7251e-134A0A2G3B725_CAPCH; Transcription factor BIM2
STRINGXP_009594832.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-77BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]