PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00191g00114.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 18855.2 Da    PI: 4.9374
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00191g00114.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.42.1e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+eyss
  Peaxi162Scf00191g00114.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSS 59
                              68***********************************************96 PP
2K-box49.12.4e-17591153490
                     K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                               + R++ Ge+L+ Ls++eLqqLe+ Le +l ++ ++K + ++++i++lq+k  e++++
  Peaxi162Scf00191g00114.1  59 SSRQMRGEELQGLSIEELQQLERTLEAGLGRVIERKGDKIMREINQLQQKVMEISNN 115
                               67*************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.487161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.04E-36260No hitNo description
SuperFamilySSF554551.2E-28364IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.33639130IPR002487Transcription factor, K-box
PfamPF014865.4E-1359113IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS  60
RQMRGEELQG LSIEELQQLE RTLEAGLGRV IERKGDKIMR EINQLQQKVM EISNNGYKNP  120
AAAVVAVELE NAANEEGQSS ESVTNACNST GPPQDDDSSD TSLKLGLPYS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20160160MEF2C
5f28_B7e-20160160MEF2C
5f28_C7e-20160160MEF2C
5f28_D7e-20160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6660981e-104FJ666098.1 Petunia x hybrida EXTRAPETALS mRNA, complete cds.
GenBankGU1299071e-104GU129907.1 Petunia x hybrida MADS-box protein 20 (PMADS20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783886.14e-98PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY67e-78JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLD1MBJ91e-108D1MBJ9_PETHY; EXTRAPETALS
STRINGXP_009783886.12e-97(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]