PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00204g00057.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 440aa    MW: 50931.4 Da    PI: 8.8105
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00204g00057.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.85.5e-2169162190
                      FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 
                               +fY ++Ak+ GFsvr++++  s ++   i+kr++vC + g ++++k  +++++r r+++r++Ckak+ ++k+       w+v ++
  Peaxi162Scf00204g00057.1  69 NFYVKFAKKNGFSVRRERHLGSaEHPMGIYKREYVCHRAGIPRSQKVVEKERQRDRKSSRCNCKAKMSISKDIidgMTIWKVVHF 153
                               6*****************9998556677*****************999999999*****************98766789****** PP

                      FAR1  82 eleHnHela 90 
                                + HnHel 
  Peaxi162Scf00204g00057.1 154 YNSHNHELL 162
                               *******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-1869162IPR004330FAR1 DNA binding domain
PfamPF105514.2E-9223265IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
VLNSTCTNST IGVSRNQCPC GDIGCFINGD IVAESKISNN EHGQESVINI SDCDMQEGKM  60
FKSDDEAYNF YVKFAKKNGF SVRRERHLGS AEHPMGIYKR EYVCHRAGIP RSQKVVEKER  120
QRDRKSSRCN CKAKMSISKD IIDGMTIWKV VHFYNSHNHE LLNDKEVRFL PAYRNIDILD  180
QKRITLLAKA GCSMSLIRRV LELEKGIDPG ELPFTEKDIR NFRFLRLMNG KHPQTILTDQ  240
DLGLTEAIAN ELPQTKHAFC IWHITTKFST WFSFLLGSRY SQFKSEFHRL YELGSIEEFE  300
HQWDELISQF DLGSDRHIKL LYLSRASWAL PYLKGYFFAG MTTTGRSESI NAYLKRFLHA  360
RTSLKEFVEQ VGTAVSIRNR ASEEATMRQK YYNPQIKTFM PMEKHASKIL TPFAFKLLQD  420
EMILSVEYMM DHILCATTAK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027363108.11e-133protein FAR1-RELATED SEQUENCE 11 isoform X2
SwissprotQ9SY664e-71FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A103XML81e-131A0A103XML8_CYNCS; FAR1 DNA binding domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-73FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]