PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00205g00120.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

MYB_related

Protein Properties

Length: 1157aa MW: 129635 Da PI: 9.0405

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00205g00120.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.2e-07	48	83	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++a + Rt++++ Peaxi162Scf00205g00120.1 48 EWSEEDLTRFYRAYRKYGKD-WKKVAVAVR-PRTAEMV 83 7***************99.***9999.8998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.7E-4	45	93	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.92E-8	45	92	IPR009057	Homeodomain-like
Pfam	PF00249	8.0E-6	48	83	IPR001005	SANT/Myb domain
CDD	cd00167	1.38E-5	48	83	No hit	No description
Pfam	PF06584	1.6E-32	631	731	IPR033471	DIRP domain
SMART	SM01135	1.0E-56	631	732	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1157 aa Download sequence Send to blast
MAPAKKSRSL NKRFPPSTEI SPSKDGSGDN LKKSLQRKRK LSDMLGPEWS EEDLTRFYRA 60 YRKYGKDWKK VAVAVRPRTA EMVEALYTMN RAYLSLPEGT ASVVGLIAMM TDHYCNLGAS 120 DSEQESYENG GTSRKPKKRA RGKVQPDISK TSEMASPTAT HGCLTLLKKK RSGGSRPRAV 180 GKRTPRFPVS FSYENPKGDE YFSPTRQGLK LQADDTDDDV KIALVLTEAS QRGGSPQVSK 240 TPNRRTSSAM SSPIETAKRK RVNMDMGNAK LLSSEVDEEE GSMEADTGEL FRYKNDLAET 300 GTTGRTAQKG RRHSGKKWEV DDSGDNHSDD IKEACSGTEE GQRLGAVRGK LEMEATDEKK 360 SRTSLQGPKK RSKKVLFRRD EGSAFDALQT LADLSLMMPT AENEDESRIQ VKDEVDDHVD 420 ESGSLEAVPA DKQRQKRGSA GVGSRWNQHL SKFEVASGTI SKHGKVTCTD AVPETKQVRR 480 AQKAMSSKAR KTEGHFNNSV IESLEAEAKE ASKKLTNKGK RSYQSVSPKI IKDQEHSSCA 540 DPRSERSDSA QSTAQISVAN QVNLPTKVRS RRKMDLKKPQ RQENMEIPDK SLDDTSASVA 600 ALHDRAFSRK KKISNYLSNH QVRRWCTYEW FYSAIDYPWF AKREFVEYLY HVGLGHVPRL 660 TRVEWGVIRS SLGKPRRFSE QFLSEEKEKL NQYRQSVRAH YTELREGTRE GLPTDLAKPL 720 SVGQRVIAIH PKTREIHDGS VLTVDHSRCR VQFDRPELGV EFVMDFDCMP LNPFENMPAL 780 LTRHADAVDK FFESFNERKV NVRANEYLKF QTGDIMENGD ISSHFSPPSL LNSNLLKQAK 840 VASAEADMQS KSGVMETITY QRTANSKPSG VAQIQAKEAD VLALAELTRA LDKKDAVVSE 900 LRRMNDDLLE SQKTNDCSLN DSEPFKKQYA AVLIQLNEVN DQVSSALYRL RQRNTYQGSI 960 PLAWPRPVPN FADPSGLSTF DCYTSQPQES GFLVNEIIES SKIKARTMVD AAMQAMLSLS 1020 GRENTTEKIE EAIDYAMLSF SGRDNTTKKI EEAIDYVNDR IPLDDSCMPT PPEPKSKNMP 1080 DRNEAEIPSE LITKCVATLL MIQKCTERQF PPADVAKVLD SSVASLQPCC SQNFPVYAEI 1140 QKCMGIIRNQ ILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1157 aa Download sequence Send to blast

MAPAKKSRSL NKRFPPSTEI SPSKDGSGDN LKKSLQRKRK LSDMLGPEWS EEDLTRFYRA  60
YRKYGKDWKK VAVAVRPRTA EMVEALYTMN RAYLSLPEGT ASVVGLIAMM TDHYCNLGAS  120
DSEQESYENG GTSRKPKKRA RGKVQPDISK TSEMASPTAT HGCLTLLKKK RSGGSRPRAV  180
GKRTPRFPVS FSYENPKGDE YFSPTRQGLK LQADDTDDDV KIALVLTEAS QRGGSPQVSK  240
TPNRRTSSAM SSPIETAKRK RVNMDMGNAK LLSSEVDEEE GSMEADTGEL FRYKNDLAET  300
GTTGRTAQKG RRHSGKKWEV DDSGDNHSDD IKEACSGTEE GQRLGAVRGK LEMEATDEKK  360
SRTSLQGPKK RSKKVLFRRD EGSAFDALQT LADLSLMMPT AENEDESRIQ VKDEVDDHVD  420
ESGSLEAVPA DKQRQKRGSA GVGSRWNQHL SKFEVASGTI SKHGKVTCTD AVPETKQVRR  480
AQKAMSSKAR KTEGHFNNSV IESLEAEAKE ASKKLTNKGK RSYQSVSPKI IKDQEHSSCA  540
DPRSERSDSA QSTAQISVAN QVNLPTKVRS RRKMDLKKPQ RQENMEIPDK SLDDTSASVA  600
ALHDRAFSRK KKISNYLSNH QVRRWCTYEW FYSAIDYPWF AKREFVEYLY HVGLGHVPRL  660
TRVEWGVIRS SLGKPRRFSE QFLSEEKEKL NQYRQSVRAH YTELREGTRE GLPTDLAKPL  720
SVGQRVIAIH PKTREIHDGS VLTVDHSRCR VQFDRPELGV EFVMDFDCMP LNPFENMPAL  780
LTRHADAVDK FFESFNERKV NVRANEYLKF QTGDIMENGD ISSHFSPPSL LNSNLLKQAK  840
VASAEADMQS KSGVMETITY QRTANSKPSG VAQIQAKEAD VLALAELTRA LDKKDAVVSE  900
LRRMNDDLLE SQKTNDCSLN DSEPFKKQYA AVLIQLNEVN DQVSSALYRL RQRNTYQGSI  960
PLAWPRPVPN FADPSGLSTF DCYTSQPQES GFLVNEIIES SKIKARTMVD AAMQAMLSLS  1020
GRENTTEKIE EAIDYAMLSF SGRDNTTKKI EEAIDYVNDR IPLDDSCMPT PPEPKSKNMP  1080
DRNEAEIPSE LITKCVATLL MIQKCTERQF PPADVAKVLD SSVASLQPCC SQNFPVYAEI  1140
QKCMGIIRNQ ILALIPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243718	1e-100	AC243718.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-7h19 map 1, complete sequence.
GenBank	HG975440	1e-100	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-100	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595580.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009595581.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018624867.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
TrEMBL	A0A1S3X518	0.0	A0A1S3X518_TOBAC; protein ALWAYS EARLY 3-like isoform X1
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding