PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00207g01365.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 501aa    MW: 55911.1 Da    PI: 8.9651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00207g01365.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05123145123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Peaxi162Scf00207g01365.1 123 FVCEICNKGFQRDQNLQLHKRGH 145
                               89******************988 PP
2zf-C2H213.40.00023200222123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k++  +s+ k H +t+
  Peaxi162Scf00207g01365.1 200 WKCEKCSKRYAVQSDWKAHSKTC 222
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.94E-7122145No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6122145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.3E-5123145IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.907123145IPR007087Zinc finger, C2H2
SMARTSM003550.017123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SMARTSM00355220165195IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4188221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.94E-7195220No hitNo description
SMARTSM00355130200220IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MIQQKQQVVE ENMSNITSAS GEAASFSSCN RNDIITTGGI YPLQHFTPQN QTQPQQIKKK  60
RNQPGNPGLD YTINNNLYKN FNLLFKSKHL LHILMMCLKF GGADPEAEVI ALSPKSLLAT  120
NRFVCEICNK GFQRDQNLQL HKRGHNLPWK LKKRTNNEVI RKKVYICPEP SCVHHDPSRA  180
LGDLTGIKKH FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTKEYRCE CGTIFSRRDS  240
FITHRAFCDA LSVESARSAI SKNPTLPSHM NLQFQAPHFS SMKKEQSSDY NIRNDQIPPW  300
LMTSQPYVGG GHHDFSSSIF QATRFDQGCT QSHQDLTSTN LHDEYPNPNL GGVLFTPPYH  360
STGEAATSRH ITATALLQKA AQLGATMSNK TTSPSMSSPT DTDPAMLIMR PHQTHVSATD  420
SAVSSKQNLS SREQLTSSGL LINSFGSCDE NKAAAATVPA FGFEGSTFED MTKDFLGLRP  480
LSHSDIFNIA GLVDHKTIWE S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33196263371Zinc finger protein JACKDAW
5b3h_F2e-33196263371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149162KLKKRTNNEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238130.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
TrEMBLA0A1J6KS430.0A0A1J6KS43_NICAT; Protein indeterminate-domain 11
STRINGXP_009603433.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-113indeterminate(ID)-domain 7