PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00216g00116.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 285aa    MW: 31794.9 Da    PI: 7.1791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00216g00116.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12120167355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+r+ ++f  + +llP++     kKl+Ka++L  A+ YIk+L+
  Peaxi162Scf00216g00116.1 120 QDHVLAERKRRERLTQRFIAISTLLPNL-----KKLDKASVLGDAIIYIKQLE 167
                               56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-15121182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15122184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-12122171No hitNo description
SMARTSM003536.2E-13123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
METTDMNNHS FINCNNQMMM TPFNELSFSK PQGTHHKTTF CYSNSPSANI STVAKNAHFE  60
KMNTFVKTEV PSGTTINFSS SSSLDSDFGD GQNQIQSFGF STGDTNTQKK SYSRSGLQAQ  120
DHVLAERKRR ERLTQRFIAI STLLPNLKKL DKASVLGDAI IYIKQLEEQV KTLEEKAKNC  180
KEEPVVAVKR ARLISSYEDS SSSDENSSIS TDASLPDIEV RASDGNIMIT IYCKKQTGIL  240
KEIYNEVEKL HLSINSSSVM PFGYATTHIT IIAQVLTLII FPLTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13121183873Transcription factor MYC2
5gnj_B6e-13121183873Transcription factor MYC2
5gnj_E6e-13121183873Transcription factor MYC2
5gnj_F6e-13121183873Transcription factor MYC2
5gnj_G6e-13121183873Transcription factor MYC2
5gnj_I6e-13121183873Transcription factor MYC2
5gnj_M6e-13121183873Transcription factor MYC2
5gnj_N6e-13121183873Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594425.11e-125PREDICTED: transcription factor bHLH18-like
RefseqXP_016507543.11e-125PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0723e-46BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S4D2J21e-124A0A1S4D2J2_TOBAC; transcription factor bHLH18-like
STRINGXP_009594425.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-47bHLH family protein