PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00220g00230.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YC

Protein Properties

Length: 267aa MW: 29500.6 Da PI: 4.8551

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00220g00230.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	51.7	1.9e-16	1	75	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v + Peaxi162Scf00220g00230.1 1 ARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 75 7*********************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.2E-17	1	60	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.8E-23	1	61	IPR009072	Histone-fold
SuperFamily	SSF47113	3.1E-19	7	77	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
ARIKKIMQAD EDVGKIAMAV PVLVSKALEL FLQDLCDRTY DITLRRGAKT VNSLHLKHCV 60 QSYNVFDFLR EVVSKVPDYG HSDAAGEMPK RRKVAIEEHH DSEDESKKSR MEMCASPSGS 120 SGRGRGRGRG RGRGRGSRAD RELSRPDMQL DSCTSVQQSG QQNPNPGTQV ENSTELKGSP 180 KQDSSACERE SSATTTLNLN ANIDDTVDKS TAPEIAACNS LSRPADEKAE EGPQWSLEME 240 RMVIDPAHMS QLNSSLVEEE EDYDEED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-17	1	61	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	134	RGRGRGRGRGR
2	126	135	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780056.1	1e-147	PREDICTED: dr1-associated corepressor-like
Refseq	XP_016436007.1	1e-147	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A1S3X7Z0	1e-146	A0A1S3X7Z0_TOBAC; dr1-associated corepressor-like
TrEMBL	A0A1U7WRX6	1e-146	A0A1U7WRX6_NICSY; dr1-associated corepressor-like
STRING	XP_009780056.1	1e-146	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-56	nuclear factor Y, subunit C11