PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00222g00415.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 89aa    MW: 10178.1 Da    PI: 10.5245
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00222g00415.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.34.8e-191051243
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                              +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 
  Peaxi162Scf00222g00415.1 10 FITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51
                              89**************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-25183IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.156149IPR002100Transcription factor, MADS-box
CDDcd002661.61E-20284No hitNo description
PRINTSPR004041.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-201051IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSSRKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YENQPEVWPN  60
TMGAQRVLAE FKKMPEMEQS KKMAKDCKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685101e-125FJ168510.1 Petunia x hybrida type I MADS box transcription factor (MADSy5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464483.15e-51PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-32AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S3ZJU31e-49A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRINGPOPTR_0005s00420.18e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-34AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]