PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00222g00424.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 524aa    MW: 59748.8 Da    PI: 9.964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00222g00424.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-1768108242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                               +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Peaxi162Scf00222g00424.1  68 FITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 108
                               89**************************************8 PP
2SRF-TF54.91.1e-17299339242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                               +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Peaxi162Scf00222g00424.1 299 FITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 339
                               89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.70859107IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-2459118IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-2360153IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-86181IPR002100Transcription factor, MADS-box
CDDcd002667.86E-1766143No hitNo description
PfamPF003191.1E-1868109IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-88196IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-23290349IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.694290338IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-23291384IPR002100Transcription factor, MADS-box
CDDcd002666.88E-21291374No hitNo description
PfamPF003191.1E-18299340IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSPSSYANKC KSSILIRNIS SYLYITWPFQ ATKNIKALVY QILPPCVAYL HTPKKKKKIT  60
RKKVKLAFIT NDSSRKATFK KRKKGLMKKV SELSTLCGID ACAIIYSPYE NQPEVWPNTM  120
GAQRVLAEFK KMPEMEQSKK MVNQESFIRQ RIAKASEQLK KQSKENREKE MTEVMYQCLT  180
GKGLQNLNLG DLNDLGWVVD QNLKEIYKRI EALKKGASTS SQAAVTAPVE QKPVVELGLE  240
GMKQRTQAEW FTDWMNNTST SDQHIGFGHG DEMIIPNFND NHNTSWLLSL TRKKVKLAFI  300
TNDSSRKATF KKRKKGLMKK VSELSTLCGI DACAIIYSPY ENQPEVWPNT MGAQRVLAEF  360
KKMPEMEQSK KMVNQESFIR QRIAKESEQL KKQSKENTEK EMTEVMYQCL TGKGLQNLNL  420
GDLNDLGWVV DQNLKEIYKR IEALKKGAST SSQAAVTAPV EQKPVVELGL EGMKQRTQAE  480
WFTDWMNNTS TSDQHIGFGH GDEMIIPNFN DNHNTSVWSN GFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15362KKKKKITRKK
2291313RKKVKLAFITNDSSRKATFKKRK
3310314KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685100.0FJ168510.1 Petunia x hybrida type I MADS box transcription factor (MADSy5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774462.11e-138PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-62AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2G2VZC30.0A0A2G2VZC3_CAPBA; Agamous-like MADS-box protein AGL80
STRINGXP_009774462.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-52AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]