PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00225g00024.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 150aa    MW: 16609.6 Da    PI: 6.5276
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00225g00024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.11.1e-181158148
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              k+i  ++ r vtfskRr+g++KKA+EL ++++a+va ++fs+tgk y+
  Peaxi162Scf00225g00024.1 11 KKITKDTSRMVTFSKRRQGLFKKASELETMTGARVATVVFSPTGKPYT 58
                              679999**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.194363IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-24362IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-21463IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-15525IPR002100Transcription factor, MADS-box
PfamPF003192.0E-231258IPR002100Transcription factor, MADS-box
CDDcd001209.50E-201860No hitNo description
PRINTSPR004042.6E-152540IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-154061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGTGKKKIDI KKITKDTSRM VTFSKRRQGL FKKASELETM TGARVATVVF SPTGKPYTSG  60
NVSYAIERHF CGSTDQPSSS HYYSSIDDVS GGSSTSNSAS RNGLYDWLED IDVEECQNLN  120
ELLLLKEQLE GTRKNLASVE DSESFQALFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581849.12e-63PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A2G3BTX07e-64A0A2G3BTX0_CAPCH; Agamous-like MADS-box protein AGL61
STRINGXP_009796162.12e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-14AGAMOUS-like 29