PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00225g00057.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 252aa    MW: 27251.1 Da    PI: 6.2222
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00225g00057.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.23.8e-40401411101
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lq
  Peaxi162Scf00225g00057.1  40 PCGACKFLRRKCISGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRQDAVVTITYEAQARLSDPVYGCVSTILALQ 124
                               7***********************9989********************************************************* PP

                    DUF260  85 qqleqlkaelallkeel 101
                               qq+++l+aela+++++l
  Peaxi162Scf00225g00057.1 125 QQVASLQAELAVVQTQL 141
                               ************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.41439141IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3940138IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDEPPSDGTS ENKRKGPGKR AAGAVEPPAS AGVVLVSTAP CGACKFLRRK CISGCIFAPY  60
FGSDQGAARF AAVHKVFGAS NVSKLLLHIP ANRRQDAVVT ITYEAQARLS DPVYGCVSTI  120
LALQQQVASL QAELAVVQTQ LMSSRYAVAN ALQTSQQQFQ QQQEQHIAIL QPTYSNNSSV  180
SNNNNLINNI NSASTFNSTA FDQLQPAGDN NNNSPSFDPI IHQLSSHPSH DHEDEEEEES  240
HNPVSFTNQM FH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-393914710115LOB family transfactor Ramosa2.1
5ly0_B2e-393914710115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510881.11e-118PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV38e-73LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A1S4DBV11e-117A0A1S4DBV1_TOBAC; LOB domain-containing protein 20-like
STRINGXP_009779769.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-56LOB domain-containing protein 20