PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00231g01015.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 254aa    MW: 28730.2 Da    PI: 4.7292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00231g01015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-135597754
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L
  Peaxi162Scf00231g01015.1 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 97
                              57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-1848112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5074897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-1251102No hitNo description
Gene3DG3DSA:4.10.280.102.7E-1754112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENIGDEYKN YWETNMFLQS EELTLDSYFD EAISAYYDSS SPDGAQSSMA SKNIVSERNR  60
RKKLNERLFA LRAVVPNISK MDKASIIKDA IEYIQELHEQ ERRIQAEIAE LESGRPNKKN  120
TSSLEFDQDG SFDSKPKRSK RLDQQYSYDS SGSTTRSPPS SSPVEVLELR VSSMGEKTVV  180
VSLTCSKRTD TMVKVCEIFE SLNIKIISAN ITAFSGRLLK TAFIEADEQE RDLLKMRIET  240
AIATLNDPDS PMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-145397953Transcription factor MYC2
5gnj_B8e-145397953Transcription factor MYC2
5gnj_E8e-145397953Transcription factor MYC2
5gnj_F8e-145397953Transcription factor MYC2
5gnj_G8e-145397953Transcription factor MYC2
5gnj_I8e-145397953Transcription factor MYC2
5gnj_M8e-145397953Transcription factor MYC2
5gnj_N8e-145397953Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536458e-68AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence.
GenBankAC2536768e-68AC253676.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-50e11 map 7, complete sequence.
GenBankHG9754468e-68HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755198e-68HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603228.11e-158PREDICTED: transcription factor bHLH35-like isoform X2
RefseqXP_016449593.11e-158PREDICTED: transcription factor bHLH35-like isoform X2
SwissprotQ2HIV91e-90BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3YC571e-156A0A1S3YC57_TOBAC; transcription factor bHLH35-like isoform X2
STRINGXP_009603227.11e-156(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-93bHLH family protein