PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00232g00810.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family WRKY
Protein Properties Length: 742aa    MW: 80299.1 Da    PI: 6.5475
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00232g00810.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.79.8e-33319376260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Peaxi162Scf00232g00810.1 319 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 376
                               8****************************************.***************85 PP
2WRKY104.17.5e-33532590159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Peaxi162Scf00232g00810.1 532 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 590
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-29316377IPR003657WRKY domain
SuperFamilySSF1182909.42E-26317377IPR003657WRKY domain
SMARTSM007749.0E-37318376IPR003657WRKY domain
PROSITE profilePS5081123.399319377IPR003657WRKY domain
PfamPF031063.0E-25319375IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37517592IPR003657WRKY domain
SuperFamilySSF1182901.57E-28524592IPR003657WRKY domain
PROSITE profilePS5081138.733527592IPR003657WRKY domain
SMARTSM007746.6E-38532591IPR003657WRKY domain
PfamPF031065.1E-25533590IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMPPSPS PRTFFSSLLG DDVGPRSNFE FTNENIRGNV ASGPLEHVGN  60
SDGKDGAQAG ETSEQTVKFS AMSDQKMSSR GGLLERMAAR AGFNAPKLNT ESLRPADLSQ  120
NQGVRSPYLT IPPGLSPTTL LESPVFLSNS MVQPSPTTGK FLFGSGMESR NSALMMEDPD  180
KRNENASESN NSSSFSFKPV PETAPSFFPG VTSRVNPSNH SQQGFPNTEV SGHSQNSLLS  240
HSVEATQIPT QNGALHQASD FPRFSAEKDV KGSNVTPQSR TFQTVGSTVE HSPPLDEPQD  300
EDIDQRGGGD PNVVGAPAED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCP VKKKVERSHE  360
GHITEIIYKG AHNHPKPPPN RRSALGSTNS LGEQQLDGAE QGVSGVNSDL GRANVHKAPG  420
AGGLDWRNNN LDVTSAHLGS EYYNGSAPFP AQNNTQLESG NAVDVSSTFS NDEDEDDRGT  480
QGSVSQGYDG EGDESESKRR KLESYSTEMT GATRAIREPR VVVQTTSEVD ILDDGYRWRK  540
YGQKVVKGNP NPRSYYKCTS AGCNVRKHVE RASHDLKSVI TTYEGKHNHD VPAARNSSHV  600
NSGVSNTLST PVTGPAQSHL HRPEPSQLQN AMARYDRPPS LGSFGLAGRH QLGPTPGFSY  660
GMNQQGLASL AMAGLHPNQS KSSEVPAHSY LGQPRPMHDV GFMFPKEEPK MEPMSDPGLN  720
NLSNGSSVYQ QFMSRLPLGP QM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37319593878Probable WRKY transcription factor 4
2lex_A8e-37319593878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111240.0AB711124.1 Solanum tuberosum StWRKY11 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346070.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
RefseqXP_006346071.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM1C0460.0M1C046_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-175WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]