PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00234g00220.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 626aa    MW: 70508.2 Da    PI: 7.1923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00234g00220.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.4e-103781798
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              ++p +fa+++ ++ +++    le +sg++Wev++      ++++l+kGW++F +   +  g +++F +dgrs+f   v++f+
  Peaxi162Scf00234g00220.1  3 SIPEDFASRYCKNMQSP--AYLEVPSGEVWEVEV--VHFESQIWLAKGWQDFTDYYSISCGNILMFGYDGRSCF--SVTIFD 78
                              79********5554455..9**************..66666799******************************..999987 PP
2B343.74.9e-14252330488
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                + ps+vl+  +l+++ kfa+++ ++++++ +l+l+ +   sW+vk+ +  +     +   Wk Fv++n+Lk+gD++vF++++ +
  Peaxi162Scf00234g00220.1 252 FMQPSYVLSPFNLSVSLKFARKY-LVENCG-DLVLRVPGMGSWSVKCAI--GTANAKIF--WKAFVQDNKLKVGDVCVFEVIKGT 330
                               5789*******************.566676.9***************55..33332233..*******************88643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0087180IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-14280IPR015300DNA-binding pseudobarrel domain
CDDcd100175.01E-8378No hitNo description
PfamPF023622.7E-7378IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-15380IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-18241340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15242339IPR015300DNA-binding pseudobarrel domain
CDDcd100174.76E-17247338No hitNo description
PROSITE profilePS5086310.179249341IPR003340B3 DNA binding domain
PfamPF023624.9E-12251330IPR003340B3 DNA binding domain
SMARTSM010191.7E-10252341IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-5542574IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-4543575IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MQSIPEDFAS RYCKNMQSPA YLEVPSGEVW EVEVVHFESQ IWLAKGWQDF TDYYSISCGN  60
ILMFGYDGRS CFSVTIFDLS AEEIEYPYDA VHGTFRAPKR EELDDSIEIL EDAEDDVSID  120
MQNVTSPFST RKDQKSEIVP FLEDIPKSHK GAKISDMMEH SSENIGRCPL GQSSKRKRQD  180
GDSVYDVSVD MQSVDSPFFT RKDQKTSEGC RKLTQKSKIV HDKDKAVMDK ERAIAYQRAK  240
AFKSKNPFVI SFMQPSYVLS PFNLSVSLKF ARKYLVENCG DLVLRVPGMG SWSVKCAIGT  300
ANAKIFWKAF VQDNKLKVGD VCVFEVIKGT KLIDVTIFAA GGSTSMHKIA GEVLGVSNNS  360
LPSTIVQIKK LKQQRGGPHG TEIEHAARIL GRCPSGHGSK RKKLEWEAED DVSFDIQTKY  420
IKVEEAQEDV ASPSFTRKTK SKKVFASYEE NLFDNLVVIH HYINFEFLFE ERGESSRIYK  480
RQSKIVYRKN KTVVEKERTI GYQRAQAFKS KNPFIVSFVQ PSQGDLGLSN ALSDHQMLNF  540
FLAFVLDNKL NVGDVCVFEV IKGTHPFLDV TIFRAVGSTP MDKVDAESPG VDAVSCSEPK  600
VHIRKMNLEK HQRGDSDGLA SIVKAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-31HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-31HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230776.10.0PREDICTED: uncharacterized protein LOC109211655 isoform X2
TrEMBLA0A1J6INP20.0A0A1J6INP2_NICAT; B3 domain-containing transcription factor vrn1
TrEMBLA0A1U7VGF60.0A0A1U7VGF6_NICSY; uncharacterized protein LOC104213184 isoform X3
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-29B3 family protein