PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00235g00015.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 220aa MW: 25499.2 Da PI: 6.8599

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00235g00015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.7	3.5e-27	61	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA++vGF +r+++ ++s+ +++i +r++ C+k+g++ + ++++ r+tr++ r gCka++ vk +k++kw+vt++++eH Peaxi162Scf00235g00015.1 61 EFYDDYARRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYHVKMNNHNGPPRKTRTSPREGCKAMMLVKINKSDKWVVTRFVKEH 145 6******************************************999********************************* PP FAR1 86 nHela 90 +H+l+ Peaxi162Scf00235g00015.1 146 THPLV 150 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-25	61	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
SHVSMVLFDT SKHCLVVTVD LEAGAASIDC TVESWYVACE DNVIPESFIG MEFESKEAAK 60 EFYDDYARRV GFIMRIDQCR RSEVDKRILS RRLSCNKQGY HVKMNNHNGP PRKTRTSPRE 120 GCKAMMLVKI NKSDKWVVTR FVKEHTHPLV VSVYSSHNAM DKKDRRIQEL VMELERQDDL 180 YKEQLCTLLE NVEQQMELLS NKIEVAVNNV KEIEAEVQKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016455342.1	1e-123	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016455343.1	1e-123	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3YTJ7	1e-122	A0A1S3YTJ7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009626414.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	9e-59	FAR1 family protein