PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00235g00064.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 217aa    MW: 23975.8 Da    PI: 8.2056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00235g00064.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-202573355
                       AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  Peaxi162Scf00235g00064.1 25 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 73
                              8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-122473IPR001471AP2/ERF domain
SMARTSM003801.9E-352487IPR001471AP2/ERF domain
CDDcd000183.26E-182481No hitNo description
PROSITE profilePS5103223.2352481IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-222582IPR016177DNA-binding domain
PRINTSPR003672.6E-102536IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-322581IPR001471AP2/ERF domain
PRINTSPR003672.6E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MRRGRAAAAA VPAAVNGEMN GSIRFRGVRK RPWGRFAAEI RDPWKKTRVW LGTFDSAEDA  60
ARAYDAAART LRGPKAKTNF PLPHHPYNQS FNNNPNNEGF VNSRIYPQDN PVITQRPTSS  120
GMSSTVESFS GPRPPLLRQQ TVPSRKYPRS PPVVPDDCRS DCDSSSSVVV DGECDGDGEN  180
DVIVSSSFRK PLPFDLNLPP PMDDVDSDEL RCTELCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2124881476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2596020.0HQ259602.1 Petunia x hybrida ethylene-responsive-element-binding factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305578.12e-89ethylene-responsive transcription factor 3-like
SwissprotQ9SXS82e-76ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLE3VVR71e-157E3VVR7_PETHY; Ethylene-responsive-element-binding factor 8
STRINGPGSC0003DMT4000373598e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.18e-34ethylene responsive element binding factor 3