PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00235g00216.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 224aa    MW: 25443.5 Da    PI: 8.2318
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00235g00216.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR195.56.2e-3054141290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               +Yn+YA +vGF vr+++ +ks rnge ++r++vC+keg+++++ ++ ++++++r++tr gCka++ vkke++gkw+v+kl++eHn
  Peaxi162Scf00235g00216.1  54 YYNAYAVRVGFIVRVDAFRKSMRNGERVWRRLVCNKEGFSKRKGNQ-SDKKKRRSVTREGCKAMIIVKKEQSGKWVVAKLVKEHN 137
                               8*****************************************9999.99999********************************* PP

                      FAR1  87 Hela 90 
                               H+l+
  Peaxi162Scf00235g00216.1 138 HPLV 141
                               **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2854141IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAVDENSNAT DDEEMVESSS GKELTSNDGE AEGRSNMEPY EGMEFESEEA AKAYYNAYAV  60
RVGFIVRVDA FRKSMRNGER VWRRLVCNKE GFSKRKGNQS DKKKRRSVTR EGCKAMIIVK  120
KEQSGKWVVA KLVKEHNHPL VAAPANTHRG AIFSQTPDEK DVKIRELTAE LQKERKRSAA  180
LQEQLDFVLK DMEDHSEQLT RHINDIVHSV RELDSRKVVS SNGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450609.11e-123PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_016450610.11e-123PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A1S3YEI71e-121A0A1S3YEI7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_009802876.11e-122(Nicotiana sylvestris)
STRINGXP_009620544.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127911520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-74FAR1 family protein