PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00238g01417.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 202aa    MW: 21447.5 Da    PI: 7.4266
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00238g01417.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.4e-40251251100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+++C++apyf a+q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+vg+i++lq
  Peaxi162Scf00238g01417.1  25 PCGACKFLRRKCVRGCIFAPYFDADQgTAHFAAVHKVFGASNASKLLLRIPAHKRMDAVVTLCYEALARVRDPIYGCVGHIFTLQ 109
                               7*************************89********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+ +l+aela+++++
  Peaxi162Scf00238g01417.1 110 QQVVTLQAELAYVQAR 125
                               ************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.22524126IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3825123IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSSGCGGSGL CNNNVVAGGG AGGGPCGACK FLRRKCVRGC IFAPYFDADQ GTAHFAAVHK  60
VFGASNASKL LLRIPAHKRM DAVVTLCYEA LARVRDPIYG CVGHIFTLQQ QVVTLQAELA  120
YVQARLSTLH HLPIPPVPQP QSPSPTGLQS SSDLFCTSSS ISSSNMDPQL DIIGLNDVLD  180
QELDNCDLHT LAREFVSRHL PG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37221198104LOB family transfactor Ramosa2.1
5ly0_B1e-37221198104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469456.11e-101PREDICTED: LOB domain-containing protein 19-like
SwissprotO221323e-66LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A1S3ZYS91e-100A0A1S3ZYS9_TOBAC; LOB domain-containing protein 19-like
STRINGXP_009803301.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.18e-64LOB domain-containing protein 19