PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00243g00124.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 171aa    MW: 19416.6 Da    PI: 10.4551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00243g00124.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.61e-101081481255
                       AP2  12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +g ++AeI dp     + +r ++g ++taeeAa+a++ a +k++g
  Peaxi162Scf00243g00124.1 108 WGTYAAEIIDPI----KkTRLWIGIYDTAEEAARAYDSATRKFHG 148
                               9*********72....35*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-2399162IPR001471AP2/ERF domain
PROSITE profilePS5103219.4499156IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1899157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-2499157IPR001471AP2/ERF domain
CDDcd000189.06E-2399157No hitNo description
PRINTSPR003677.5E-7100111IPR001471AP2/ERF domain
PfamPF008478.7E-6108147IPR001471AP2/ERF domain
PRINTSPR003677.5E-7122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKVFVRGLFL VQFVHRNGVL VWLESAWEKC VIVLELFLVE RSVRCVKELG RRDSRLFNKK  60
QQLEFIFQRV ASAAMSKGAR QGGVKVVLGA ASLEVDLVHY RGGRNWPWGT YAAEIIDPIK  120
KTRLWIGIYD TAEEAARAYD SATRKFHGIR AKTNFPEMLV DRVSPSVGAY G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1599156260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-1499156563ATERF1
3gcc_A1e-1499156563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FE676e-24ERF80_ARATH; Ethylene-responsive transcription factor 9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]