PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00248g01414.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 276aa    MW: 31246.2 Da    PI: 7.6453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00248g01414.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM996.8e-31621951128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                               lp+G++F+P+d+el+ e+L +kve +       ++++  +++   +i++++P +Lp          +fF++ +k+y+tg+rk+r+
  Peaxi162Scf00248g01414.1  62 LPAGVKFDPSDQELL-EHLDAKVEVDAqnlhplIDEFIqTLEGEdGICYTHPDKLP--------VRHFFHRPSKAYTTGTRKRRK 137
                               799************.99****998885565442222213444435*********9........359*****************7 PP

                       NAM  78 tk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               ++      + +W++tgk+++++  kg+++g kk+Lv+y   g+++k+ekt+Wvmh y+l
  Peaxi162Scf00248g01414.1 138 VHtniegnETRWHKTGKTRPIVI-KGKAKGYKKILVLYtnYGKQRKPEKTNWVMHHYHL 195
                               44345555888************.9999**********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3356214IPR003441NAC domain
PROSITE profilePS5100528.49162214IPR003441NAC domain
PfamPF023654.2E-1563195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTCSNESADE QSIPSKDRPS NSLENPFTNG TPKVKTMVCP SCGHPIRSVE KEQDGIHNLP  60
GLPAGVKFDP SDQELLEHLD AKVEVDAQNL HPLIDEFIQT LEGEDGICYT HPDKLPVRHF  120
FHRPSKAYTT GTRKRRKVHT NIEGNETRWH KTGKTRPIVI KGKAKGYKKI LVLYTNYGKQ  180
RKPEKTNWVM HHYHLGDDED EKEGELVISK VFYQTQPRQC ASLIKDFSSA VGANGQDGSH  240
LKESTLVESF NPTIISFDQC ELNRPTPRFL SNFNIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193007.11e-134PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-104NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2Z5HVI91e-134A0A2Z5HVI9_IPOBA; NAC8 protein
STRINGXP_009587632.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-100NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]