PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00250g00016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 114aa    MW: 13270.2 Da    PI: 10.5185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00250g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-0624661355
                              HHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                       HLH 13 RdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                              R++i+  + +L +l+P+a +++s+  +s    Le+A +YIk+Lq
  Peaxi162Scf00250g00016.1 24 RNQIKPLYLKLNSLVPHA-QQYSTDvVSLPNQLEEAANYIKKLQ 66
                              899**************8.6999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.87E-72487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-52486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MELQQCNNRA SSSLSKADRK TIERNQIKPL YLKLNSLVPH AQQYSTDVVS LPNQLEEAAN  60
YIKKLQIHLE RMRLRKEGLT RGHDQISSGR SSNRRIKEWL SLPHIEIHHH GIQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619774.12e-32PREDICTED: uncharacterized protein LOC104111721
RefseqXP_016503357.12e-32PREDICTED: uncharacterized protein LOC107821437
SwissprotF4JIJ71e-13BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A1S4CQ285e-31A0A1S4CQ28_TOBAC; uncharacterized protein LOC107821437
STRINGXP_009619774.18e-32(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-16bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]