PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00264g00014.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 444aa    MW: 50117.4 Da    PI: 5.7412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00264g00014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.41.2e-96594412373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 
                               ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ + +++ ++ ++  l  f+
  Peaxi162Scf00264g00014.1  59 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTTNLNYSMDtHKFSIIELASFV 141
                               79****************************************************..666666655555544436667777777** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                               +++P+++f++ +aN aIleaveg + +Hi+Df++++++Q p+L++a+++R egpp +++T+ g  e        ++ee+g +L +
  Peaxi162Scf00264g00014.1 142 DLTPWHRFGFTAANGAILEAVEGYSIIHIVDFSLTHCMQIPTLIEAISTRLEGPPLVKLTVAGVTEDLppmLDLSYEELGAKLVN 226
                               ************************************************************9999666688888999********* PP

                      GRAS 168 fAeelgvpfefnvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsles...erdevLklvkslsP 236
                               fA++ +v +ef+v+        ++      +e+Lrv++      gEal+Vn++++lh++++e++s++s    r+ +Lk+++s+ P
  Peaxi162Scf00264g00014.1 227 FARSRNVMMEFRVIpssssdgFSNV-----IEQLRVQNlirhenGEALVVNCHMMLHYIPEETLSITSvssFRTMFLKAIRSIDP 306
                               *************987644444444.....55555555555556********************999877789************ PP

                      GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                               ++vv+v+++ad +s++++ r+ +a++y +  +d++++ lp+ s++r+++E+  + ++i+nv+a+eg +r er e +++W +r+++
  Peaxi162Scf00264g00014.1 307 TIVVLVDEDADFTSNNLVCRLRSAFNYLWIPYDTVDTFLPKGSKQRQWYEAD-ICWKIENVIAHEGLQRLERLEPKSQWVQRMRN 390
                               ****************************************************.******************************** PP

                      GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               a F++  +se+a+ ++k +l +++  g+ ++ +++ lvl+Wk++++v+++aW
  Peaxi162Scf00264g00014.1 391 ANFRSSGFSEDAVLEVKNMLDEHA-AGWGLKRDEEDLVLTWKGHNVVFATAW 441
                               ************************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.76932423IPR005202Transcription factor GRAS
PfamPF035144.1E-9459441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MQFTESLPLP PSLHQVSPFS NLMMNKNNDN HQIQQRGRSW PGFPTSKNLG TIGDANCMEQ  60
LLVHCANAIE SNDATLAQQI LWVLNNIAPP DGDSNQRLTC GFLRALIVRA AKIGTCKLLT  120
TNLNYSMDTH KFSIIELASF VDLTPWHRFG FTAANGAILE AVEGYSIIHI VDFSLTHCMQ  180
IPTLIEAIST RLEGPPLVKL TVAGVTEDLP PMLDLSYEEL GAKLVNFARS RNVMMEFRVI  240
PSSSSDGFSN VIEQLRVQNL IRHENGEALV VNCHMMLHYI PEETLSITSV SSFRTMFLKA  300
IRSIDPTIVV LVDEDADFTS NNLVCRLRSA FNYLWIPYDT VDTFLPKGSK QRQWYEADIC  360
WKIENVIAHE GLQRLERLEP KSQWVQRMRN ANFRSSGFSE DAVLEVKNML DEHAAGWGLK  420
RDEEDLVLTW KGHNVVFATA WVPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-474144376474Protein SHORT-ROOT
5b3h_B6e-484144322420Protein SHORT-ROOT
5b3h_E6e-484144322420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560964.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8FZ100.0A0A1U8FZ10_CAPAN; Scarecrow-like protein 32
TrEMBLA0A2G3AB420.0A0A2G3AB42_CAPAN; scarecrow-like protein 32
STRINGXP_009607182.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein