PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00267g00038.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YA

Protein Properties

Length: 263aa MW: 29504.2 Da PI: 9.3698

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00267g00038.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	51.9	2.6e-16	123	159	1	38
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 +ep++VNaKQy++Il+RRq+Rak+e+e+kl k+rk + Peaxi162Scf00267g00038.1 123 EEPVFVNAKQYHGILRRRQSRAKAESENKL-LKARKVF 159 69****************************.8888865 PP
2	CBFB_NFYA	37.6	7.2e-12	211	232	37	58
CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58 pylheSRh hAl+R+Rg+gGrF Peaxi162Scf00267g00038.1 211 PYLHESRHLHALKRARGCGGRF 232 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.7E-11	121	182	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	25.561	122	235	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.0E-25	124	232	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	127	147	IPR018362	CCAAT-binding factor, conserved site
SMART	SM00521	0.0057	188	235	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDSSENEQPQ KQSEAQSPSS SAVAGLSFPG TLTPNTHYMM PSQLGNANAM CLHVHALYLQ 60 EGRRKGNNAH TAYPYPDPYY RSIFAPYEAQ PYPAQPYPAQ SMVHLQLMGI QQAGVPLPSD 120 NVEEPVFVNA KQYHGILRRR QSRAKAESEN KLLKARKVFC TNALWYHFIF RVSCFNQPAL 180 KAMWQHIGSS ADLYIPVHQP TSFGNLYRIP PYLHESRHLH ALKRARGCGG RFQKKTGESG 240 DNSQANLNTD SNKIEITSSE NVS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759697.1	8e-91	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_009759698.1	8e-91	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_009759699.1	8e-91	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_016487785.1	8e-91	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_016487786.1	8e-91	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_016487787.1	8e-91	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_016487788.1	8e-91	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBL	A0A1S4BG10	2e-89	A0A1S4BG10_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBL	A0A1U7VBM4	2e-89	A0A1U7VBM4_NICSY; nuclear transcription factor Y subunit A-7-like isoform X1
STRING	XP_009759697.1	3e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	2e-42	nuclear factor Y, subunit A7