PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00267g00714.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LSD
Protein Properties Length: 115aa    MW: 12216.5 Da    PI: 8.1694
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00267g00714.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.22.6e-13730124
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                              C+gCrt+L YPrGA++V+Ca+C++
  Peaxi162Scf00267g00714.1  7 CSGCRTILLYPRGATNVCCAVCNA 30
                              **********************98 PP
2zf-LSD148.31.6e-154670125
                   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                              CggCrtlL+ PrGA+sVRCa+C+tV
  Peaxi162Scf00267g00714.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70
                              ************************9 PP
3zf-LSD144.42.7e-1484107124
                   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                               Cg+Crt+L+YP GApsV+Ca+C+ 
  Peaxi162Scf00267g00714.1  84 CGNCRTMLMYPCGAPSVKCAICQY 107
                               **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.3E-13432IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-174373IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.5E-1581111IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-1384108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MQSQLVCSGC RTILLYPRGA TNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT  60
SVRCACCHTV NLVPGPNQFA HVNCGNCRTM LMYPCGAPSV KCAICQYITH VNVSD
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-39HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783613.11e-76PREDICTED: protein LOL2-like isoform X1
RefseqXP_016507388.11e-76PREDICTED: protein LOL2-like
RefseqXP_016510524.11e-76PREDICTED: protein LOL2-like
RefseqXP_019231807.11e-76PREDICTED: protein LOL2-like
SwissprotQ0J7V95e-52LSD1_ORYSJ; Protein LSD1
SwissprotQ93ZB12e-52LOL1_ARATH; Protein LOL1
TrEMBLA0A1S4D2293e-75A0A1S4D229_TOBAC; protein LOL2-like
TrEMBLA0A1S4DBD83e-75A0A1S4DBD8_TOBAC; protein LOL2-like
TrEMBLA0A1U7WYC93e-75A0A1U7WYC9_NICSY; protein LOL2-like isoform X1
STRINGXP_009783613.14e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-55lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]