PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00271g00075.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23892.7 Da    PI: 7.047
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00271g00075.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221563249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                              +ien sn qvtfskRr+g++KKA+ELS+LC+aeva++ f+++ +k+y +
  Peaxi162Scf00271g00075.1 15 KIENASNLQVTFSKRREGLFKKASELSTLCGAEVAILAFAPNsNKVYSF 63
                              79*************************************9853788877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-29666IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.894657IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-26795IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-16828IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231563IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MPRKSEGRKK VKMAKIENAS NLQVTFSKRR EGLFKKASEL STLCGAEVAI LAFAPNSNKV  60
YSFGHPCADE IMNRYLARNP PNDETNNNNV NNELIEAFRN SSISDITNEL NQKEHELEME  120
RKRGEALQAV RKSKEACQHN WWETPIKKLN YDQVQQVKEA LEELHYIVKS EAEHQMVNEN  180
AAFPFKNFGS ALSPGINFDS NEASGSGSTA SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-16790183Myocyte-specific enhancer factor 2A
3kov_B3e-16790183Myocyte-specific enhancer factor 2A
3kov_I3e-16790183Myocyte-specific enhancer factor 2A
3kov_J3e-16790183Myocyte-specific enhancer factor 2A
3p57_A3e-16790183Myocyte-specific enhancer factor 2A
3p57_B3e-16790183Myocyte-specific enhancer factor 2A
3p57_C3e-16790183Myocyte-specific enhancer factor 2A
3p57_D3e-16790183Myocyte-specific enhancer factor 2A
3p57_I3e-16790183Myocyte-specific enhancer factor 2A
3p57_J3e-16790183Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019242819.16e-67PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6INK31e-65A0A1J6INK3_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009779105.14e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2521322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-45AGAMOUS-like 62