PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00272g00226.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 149aa    MW: 17458.1 Da    PI: 10.0759
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00272g00226.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF276e-091354243
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                              +i+n+  r +tfskR+ g+ KK +EL    + ++ +i+f +t
  Peaxi162Scf00272g00226.1 13 KIKNEEDRFTTFSKRQSGLYKKVSELVLQYNLDIRIILFLPT 54
                              599***********************8878888888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0017163IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-141374IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.9931364IPR002100Transcription factor, MADS-box
PfamPF003194.2E-141360IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
KDDKRVPENF DGKIKNEEDR FTTFSKRQSG LYKKVSELVL QYNLDIRIIL FLPTKKPFSF  60
FHPTPETIID RFLYPTMQLS ESTRLVAAHA RSKIKKKAAL SALALEFDKM KEISARGWWE  120
SIEQFNTNEV MKFEAWLNST AFNMDSRLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781581.13e-57PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016474013.14e-57PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4ABV19e-56A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
TrEMBLA0A1U7WW966e-56A0A1U7WW96_NICSY; agamous-like MADS-box protein AGL61
STRINGXP_009781581.11e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-18AGAMOUS-like 61