PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00274g00002.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28656.2 Da    PI: 4.8373
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00274g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.4e-213578245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              +i+n+ nrqvtfskRr g++KKA+EL+ L++ae+a+i+ s +gk
  Peaxi162Scf00274g00002.1 35 PINNQNNRQVTFSKRRLGLFKKASELCLLTGAEIAIIVQSLKGK 78
                              79**************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.3342678IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-252686IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-2427116IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-142848IPR002100Transcription factor, MADS-box
PfamPF003191.8E-193681IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-144863IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-146384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKSAINVAII NLLSHTMNVN TKKKTQGRRK IAIQPINNQN NRQVTFSKRR LGLFKKASEL  60
CLLTGAEIAI IVQSLKGKRI FAFGHPSVDA VIDRYINGKS LSTEVDKFDN VQQNNQYYSQ  120
ICRELEAEKQ KKEIIEELKI VNDNNDGGIW WDEEPTNDMG IEELEEFVSA LEELKKNVTR  180
RADELSMING SSMPTSSLNS TSINIARFGI VDQCLNEAVN YCASIVPFDF DHQGGDDSSD  240
RPESSEIGDY LNDCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.11e-100agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7ERW31e-98A0A3Q7ERW3_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.12e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62