PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00276g00115.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 106aa MW: 12343.7 Da PI: 10.7102

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00276g00115.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39	1e-12	12	48	4	41
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ++ + qvtfsk +n +lKKA+ELS Cd ev +i s Peaxi162Scf00276g00115.1 12 KSAISSQVTFSKQLNRLLKKAFELSLQCDCEVGLIF-S 48 677889***************************984.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.9E-7	1	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.077	1	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-13	3	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.7E-11	16	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MVRGKAQIRH TKSAISSQVT FSKQLNRLLK KAFELSLQCD CEVGLIFSPR SSVNFLLKAT 60 KFVHYYVLDE YLLNFLLVNS KQIKNLMSKE LIAKKISQKE VMRKYK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	2e-16	AGAMOUS-like 19