PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00284g00018.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 221aa MW: 24024.3 Da PI: 7.8838

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00284g00018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.2e-39	44	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l pe++r d+++slvyeA++r+rdPvyG++g i++lqq Peaxi162Scf00284g00018.1 44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMV-PESQRADTANSLVYEANVRLRDPVYGCMGAISALQQ 127 7******************************************986.******************************** PP DUF260 86 qleqlkaelallkee 100 q++ l+ael+ +++e Peaxi162Scf00284g00018.1 128 QVQALQAELHIIRAE 142 *******999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.857	43	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-39	44	140	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
EIYEEIGKKI KREADHDYSQ MGRRYMLGPP GAGSFNNMLN TITPCAACKL LRRRCAQECP 60 FSPYFSPHEP QKFASVHKVF GASNVSKMLM VPESQRADTA NSLVYEANVR LRDPVYGCMG 120 AISALQQQVQ ALQAELHIIR AEIIKYKFGD GTTSSTLNIP SSHLVSTLLS SGAVSVVAPP 180 SPPPPLSLPP TSSSASMYTD QPSATTEFST ISSENNISYF G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	30	150	6	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	30	150	6	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016577136.1	1e-106	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-77	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1U8H0X0	1e-105	A0A1U8H0X0_CAPAN; LOB domain-containing protein 15
STRING	cassava4.1_031813m	2e-98	(Manihot esculenta)
STRING	XP_009777195.1	3e-98	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-72	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]