PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00284g00525.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 161aa    MW: 17921.2 Da    PI: 5.9723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00284g00525.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.22.9e-298951100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +Ca+Ck+lrr+CakdC+++pyfp+++p+kfa+vhk            +lp ++r da+sslvyeA+ar++dPvyG+vg i+ lq+
  Peaxi162Scf00284g00525.1   8 PCASCKLLRRRCAKDCIFSPYFPSDDPHKFAIVHK------------ELPVHQRADAVSSLVYEANARMKDPVYGCVGAISYLQN 80 
                               7********************************97............99************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ql+ +lal+++e
  Peaxi162Scf00284g00525.1  81 QVSQLQMQLALAQAE 95 
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.737796IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-27893IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGGNSNSPCA SCKLLRRRCA KDCIFSPYFP SDDPHKFAIV HKELPVHQRA DAVSSLVYEA  60
NARMKDPVYG CVGAISYLQN QVSQLQMQLA LAQAEILCIQ MQSQDQSPNL PIMSTPIHEL  120
LSNDKSFLFS DNFSQDLDFA SSSHRSSCNS EISQEGVFLW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-374977112LOB family transfactor Ramosa2.1
5ly0_B1e-374977112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604707.13e-78PREDICTED: LOB domain-containing protein 12-like
RefseqXP_016435041.13e-78PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-61LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S3X5C48e-77A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like
STRINGXP_009604706.12e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-55LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]