PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00285g00311.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 346aa MW: 37974.2 Da PI: 8.3642

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00285g00311.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	275	319	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR ri +++ +L++l+P+ ++ + a++L +AveYIk+Lq Peaxi162Scf00285g00311.1 275 VAERVRRTRISERMRKLQDLVPNM----DTQTNTADMLDLAVEYIKDLQ 319 78*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.091	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-16	271	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-12	272	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.1E-15	273	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-13	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	275	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MESEFENINQ NNSTSGLLRF LSVPSTFLEN YCDDEVVKNG NNKGKKNNGS SSKFNLGLEE 60 GNKGMVNGFV ALSSQLPPPY PRQNSSTQVG SSNNLMRQNS SPAGLFSHLN PQNGYGVGDY 120 RMANGANGDM VSPTSRLKGQ LSFPSGAPTS SLGMLSRISE VENESSITTS LDDDKSGNGN 180 SEAQFYNSGL PFASWSRDAS HFQESFTGHK RELDHEVANV QIAQLGNRPP ILSHHSSLPK 240 TSADIAAMEK LLQLQDTVPC KIRAKRGCAT HPRSVAERVR RTRISERMRK LQDLVPNMDT 300 QTNTADMLDL AVEYIKDLQK QYKSLTDCRA NCQCSAMQKS VSNQRV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MESEFENINQ NNSTSGLLRF LSVPSTFLEN YCDDEVVKNG NNKGKKNNGS SSKFNLGLEE  60
GNKGMVNGFV ALSSQLPPPY PRQNSSTQVG SSNNLMRQNS SPAGLFSHLN PQNGYGVGDY  120
RMANGANGDM VSPTSRLKGQ LSFPSGAPTS SLGMLSRISE VENESSITTS LDDDKSGNGN  180
SEAQFYNSGL PFASWSRDAS HFQESFTGHK RELDHEVANV QIAQLGNRPP ILSHHSSLPK  240
TSADIAAMEK LLQLQDTVPC KIRAKRGCAT HPRSVAERVR RTRISERMRK LQDLVPNMDT  300
QTNTADMLDL AVEYIKDLQK QYKSLTDCRA NCQCSAMQKS VSNQRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019243015.1	1e-163	PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBL	A0A1J6J356	1e-161	A0A1J6J356_NICAT; Transcription factor bhlh130
STRING	XP_009768432.1	1e-160	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-75	bHLH family protein