PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00287g01628.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family BBR-BPC
Protein Properties Length: 378aa    MW: 42863.3 Da    PI: 10.0933
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00287g01628.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind369.85.1e-1137837816301
                 GAGA_bind  16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvq 100
                               +++s+k     q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a++ern+a++erdn++++l+++e s+     +g q
  Peaxi162Scf00287g01628.1  78 HQPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAITERNNAIMERDNAIASLQYRESSM-----SGGQ 152
                               335666.....************************************************************99984.....5778 PP

                 GAGA_bind 101 vlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                               +++g+++++++qq +++ +++++++++ r+++++e++p++ aa    e +k+++++rak+pk+ + +kk+ k +   kkvk+e++
  Peaxi162Scf00287g01628.1 153 IVHGVEHMHHHQQhVHHqKHMGEPTYNHRDMHMNESMPVSPAA---LEPTKPRRNKRAKEPKAVTDSKKTPKAS---KKVKRETE 231
                               9**********996444689******************88755...4555555555666666665554444333...33333333 PP

                 GAGA_bind 184 der.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                               d +                             sk ++k++dl+ln+v++De+t+PvPvC+CtGa r CYkWGnGGWqS+CCtt++
  Peaxi162Scf00287g01628.1 232 DLNqttfgksqewngaqeigaasddlnrqlvvSKPDWKDQDLGLNQVAFDETTMPVPVCTCTGAVRPCYKWGNGGWQSSCCTTNL 316
                               31123466778899*********************************************************************** PP

                 GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                               S+yPLP+++++r+aRi+grKmS++af klL++LaaeG dlsnpvDLk+hWAkHGtn+++ti+
  Peaxi162Scf00287g01628.1 317 SMYPLPAVPNKRHARIGGRKMSGSAFAKLLSRLAAEGNDLSNPVDLKNHWAKHGTNRYITIK 378
                               *************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.6E-14366378IPR010409GAGA-binding transcriptional activator
PfamPF062171.5E-10173378IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMMYSRRLII RIGISTSLLC LGGSNHSRRW LSLDEYMSIL SDRRLKLILT VTTTYIIWMT  60
VDIMIMEGIN RLRWLMQHQP SMKQIMAIMA ERDAAIQERN LALSEKKAAL AERDMAILQR  120
DSAITERNNA IMERDNAIAS LQYRESSMSG GQIVHGVEHM HHHQQHVHHQ KHMGEPTYNH  180
RDMHMNESMP VSPAALEPTK PRRNKRAKEP KAVTDSKKTP KASKKVKRET EDLNQTTFGK  240
SQEWNGAQEI GAASDDLNRQ LVVSKPDWKD QDLGLNQVAF DETTMPVPVC TCTGAVRPCY  300
KWGNGGWQSS CCTTNLSMYP LPAVPNKRHA RIGGRKMSGS AFAKLLSRLA AEGNDLSNPV  360
DLKNHWAKHG TNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8087240.0KJ808724.1 Nicotiana tabacum GAGA-binding transcriptional activator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313105.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_009798749.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009798750.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009798751.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451527.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451528.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451530.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451531.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509512.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509513.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509514.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509515.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509516.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_018628854.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_018628855.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_018628856.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_018628857.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_019244940.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_019244941.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
SwissprotQ8L9991e-128BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A076L2D60.0A0A076L2D6_TOBAC; GAGA-binding transcriptional activator
TrEMBLA0A1J6J2730.0A0A1J6J273_NICAT; Protein basic pentacysteine6
TrEMBLA0A1U7Y9Y30.0A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like
STRINGXP_009798749.10.0(Nicotiana sylvestris)
STRINGXP_009610156.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-113basic pentacysteine 6