PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00288g01211.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 267aa    MW: 31250.9 Da    PI: 9.7599
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00288g01211.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-15281071799
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                +p k +++ + +++   + +l+ +sg+sW+v++  r  ++ yv+ +GW+ Fvk+++L++ D +vF++dg s+f   v++f++
  Peaxi162Scf00288g01211.1  28 LIPHKLVTNLKDSHKLLGQKILKGPSGNSWKVEV-KRTEDDDYVFCNGWELFVKDHNLEAEDLLVFRMDGFSSF--DVMIFNR 107
                               6788887666444445556678************.3555555*************************9887999..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.2E-725108IPR003340B3 DNA binding domain
PfamPF023625.3E-1327107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-1728110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-1729113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-1448106No hitNo description
PROSITE profilePS5086312.53448108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MATICERCKG LEKKKYWEKF NQQQFFKLIP HKLVTNLKDS HKLLGQKILK GPSGNSWKVE  60
VKRTEDDDYV FCNGWELFVK DHNLEAEDLL VFRMDGFSSF DVMIFNRSAC QKEDSFFVKK  120
QRNPCKHPVE VIDIDDDTSD HESSENDENS NDSSEQQSYG KQYSFHLPEP SKGKKLKKIL  180
IAKQEKRKRK CTPLSSCKKK MGLDERSHMF SNKRLVTQKE RRKVLQMASR HISFVPTFLV  240
TMQPTHVDRG QLLTITHRLT TIYTSPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338757.11e-106PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0V0I0F91e-104A0A0V0I0F9_SOLCH; Putative B3 domain-containing protein REM16-like
STRINGSolyc02g090170.2.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-19B3 family protein