PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00299g00543.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 305aa    MW: 32672.2 Da    PI: 6.3474
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00299g00543.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.55.9e-16217252134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  Peaxi162Scf00299g00543.1 217 CRHCGISSksTPMMRRGPAGPRSLCNACGLKWANKG 252
                               *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.81880115IPR010399Tify domain
SMARTSM009793.6E-1280115IPR010399Tify domain
PfamPF062009.3E-1383114IPR010399Tify domain
PROSITE profilePS5101713.205147189IPR010402CCT domain
PfamPF062033.6E-16147189IPR010402CCT domain
PROSITE profilePS501148.814211268IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-11211265IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-11212262No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14215258IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.70E-14216266No hitNo description
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
PfamPF003208.4E-14217252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MYGRDTMNAA ALHHQIDDDD DDDDVTIAGD TVGRESIDNP TPFHHHHSHS HSLHNETTVA  60
MNGVEGGALY CPQTEIVAAG SGASDQLTLS FQGEVYVFDA VSPEKVQAVL LLLGGYEVPA  120
GIPTVSVAAQ SQRASGDFSG RVNLPQRAAS LNRFREKRKE RCFDKKIRYT VRKEVAMRMQ  180
RKKGQFTSSK SISDEAAGSS TADWNEGSGQ EEQETSCRHC GISSKSTPMM RRGPAGPRSL  240
CNACGLKWAN KGILRDLSKV PTPGAQDQTA KLGEQTNGEP NGSEAMAAAA IINAGGDNTV  300
VTAER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331283e-37AC233128.10 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence.
GenBankAC2408663e-37AC240866.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence.
GenBankHG9754403e-37HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755133e-37HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609389.11e-167PREDICTED: GATA transcription factor 28-like
SwissprotQ8GXL72e-81GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4B0D61e-160A0A1S4B0D6_TOBAC; GATA transcription factor 24-like
STRINGXP_009609389.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-83ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]