PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00299g10019.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 149aa MW: 16498.8 Da PI: 4.6294

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00299g10019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	142.7	3.7e-44	2	148	13	179
GRAS 13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +sg+le+a+ +L +s+laspdgd+mqR+a+y+teALa r++rs+++lyk l++++ s +se + +++++ Peaxi162Scf00299g10019.1 2 ASGSLENANIAL-DISHLASPDGDTMQRIASYLTEALADRILRSWPGLYKVLQSTKLS--VVSED-------------ILVAFMV 70 577888888777.69*********************************99988887..24444.............44689 PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 +NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTg ++ +ke l ++++ L++ A++l+ pf+fn Peaxi162Scf00299g10019.1 71 TNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQNLSARPEGPPHLRITGAHQ----QKEVLDHMAHVLTEEAANLDFPFQFN 148 **************************************************....9**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	26.218	1	149	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-41	2	148	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MASGSLENAN IALDISHLAS PDGDTMQRIA SYLTEALADR ILRSWPGLYK VLQSTKLSVV 60 SEDILVAFMV TNQAIIEAME GEKMVHIVDL NAAEPLQWRA LLQNLSARPE GPPHLRITGA 120 HQQKEVLDHM AHVLTEEAAN LDFPFQFNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-27	1	147	30	192	Protein SCARECROW
5b3h_A	1e-26	1	147	29	191	Protein SCARECROW
5b3h_D	1e-26	1	147	29	191	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	6e-89	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	6e-89	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252879.1	3e-85	scarecrow-like protein 3
Refseq	XP_015061792.1	4e-85	scarecrow-like protein 3
Swissprot	Q9LPR8	2e-66	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A3Q7JDZ1	7e-84	A0A3Q7JDZ1_SOLLC; Uncharacterized protein
STRING	Solyc12g099900.1.1	1e-84	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16041	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	8e-69	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]